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    LOC4325049 protein LIKE COV 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325049, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325049
    Gene description
    protein LIKE COV 2
    Locus tag
    OSNPB_010867900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 45.5), leaves before flowering (RPKM 42.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38212562..38215834, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37584843..37588126, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein YIP4b Neighboring gene polypyrimidine tract-binding protein homolog 3 Neighboring gene ethylene-responsive transcription factor ABR1 Neighboring gene protein S-acyltransferase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LIKE COV 2
    Names
    Os01g0867900
    P0677H08.9-1
    membrane protein COV-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38212562..38215834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758144.3 → XP_015613630.1  protein LIKE COV 2

      UniProtKB/TrEMBL
      A0A0P0VAV7, A0A8J8Y4N3, A2WXC4, Q0JHE7, Q8S1P4
      Conserved Domains (1) summary
      cl01107
      Location:52 → 244
      DUF502; Protein of unknown function (DUF502)
    Nucleotide Protein
    Heading Accession and Version

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