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    LOC4326228 rapid alkalinization factor [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326228, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326228
    Gene description
    rapid alkalinization factor
    Locus tag
    OSNPB_010257100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0462H08.2
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    Genomic context

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    See LOC4326228 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8589103..8589981, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8577222..8577929, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 4-like Neighboring gene probable U6 snRNA-associated Sm-like protein LSm4 Neighboring gene flowering-promoting factor 1-like protein 1 Neighboring gene zinc finger CCCH domain-containing protein 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in calcium-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rapid alkalinization factor
    Names
    Os01g0257100
    P0711E10.45
    putative RALF

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8589103..8589981 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777562.3 → XP_015633048.1  rapid alkalinization factor

      UniProtKB/TrEMBL
      A0A0P0V154, A2ZRF2, Q9SDJ5
      Conserved Domains (1) summary
      pfam05498
      Location:68 → 131
      RALF; Rapid ALkalinization Factor (RALF)
    Nucleotide Protein
    Heading Accession and Version

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