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    LOC4330362 serine carboxypeptidase-like 17 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330362, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330362
    Gene description
    serine carboxypeptidase-like 17
    Locus tag
    OSNPB_020687900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1743_B12.5
    Expression
    Broad expression in flowers (RPKM 32.2), flower buds (RPKM 24.5) and 5 other tissues See more
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    Genomic context

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    See LOC4330362 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28700746..28705774)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28212071..28216945)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BOI-related E3 ubiquitin-protein ligase 1 Neighboring gene uncharacterized LOC9270185 Neighboring gene pectinesterase inhibitor 12 Neighboring gene dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in secondary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 17
    Names
    Os02g0687900
    putative serine carboxypeptidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28700746..28705774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767889.3 → XP_015623375.1  serine carboxypeptidase-like 17

      UniProtKB/TrEMBL
      B8AGS3, B9F1V9
      Conserved Domains (1) summary
      pfam00450
      Location:50 → 477
      Peptidase_S10; Serine carboxypeptidase

    RNA

    1. XR_010739056.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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