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    LOC4329321 gamma-glutamylcyclotransferase 2-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329321, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329321
    Gene description
    gamma-glutamylcyclotransferase 2-2
    Locus tag
    OSNPB_020465900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1342_D02.8
    Expression
    Broad expression in mature seeds (RPKM 535.2), milk grains (RPKM 247.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329321 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16134772..16137901, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (15676331..15679684, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At1g23390 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene inositol-tetrakisphosphate 1-kinase 4-like Neighboring gene uncharacterized LOC4329323

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco. Uddin MI, et al. Plant Cell Physiol, 2008 Jun. PMID 18420595
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. a new type of protein participating in Na+ uptake in vacuoles
      Title: Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gamma-glutamylcyclotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutathione specific gamma-glutamylcyclotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gamma-glutamylcyclotransferase 2-2
    Names
    Os02g0465900
    putative OsCTTP
    putative glutathione-specific gamma-glutamylcyclotransferase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      16134772..16137901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770472.2 → XP_015625958.1  gamma-glutamylcyclotransferase 2-2

      UniProtKB/TrEMBL
      A0A0N7KF94, A3A6N3, B8AHI6, Q6K7C2
      Conserved Domains (1) summary
      cl22886
      Location:3 → 180
      GGCT_like; GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is ...
    Nucleotide Protein
    Heading Accession and Version

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