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    LOC4352021 ribulose bisphosphate carboxylase small chain, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352021, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4352021
    Gene description
    ribulose bisphosphate carboxylase small chain, chloroplastic-like
    Locus tag
    OSNPB_120292400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 695.0), leaves before flowering (RPKM 666.1) and 4 other tissues See more
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    Genomic context

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    See LOC4352021 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (11320272..11321374)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene uncharacterized LOC107279716 Neighboring gene chloroplast sensor kinase, chloroplastic Neighboring gene telomerase reverse transcriptase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Availability of Rubisco small subunit up-regulates the transcript levels of large subunit for stoichiometric assembly of its holoenzyme in rice. Suzuki Y, et al. Plant Physiol, 2012 Sep. PMID 22811433, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The availability of RBCS protein up-regulates the gene expression of rbcL primarily at the transcript level in a quantitative manner for stoichiometric assembly of Rubisco holoenzyme.
      Title: Availability of Rubisco small subunit up-regulates the transcript levels of large subunit for stoichiometric assembly of its holoenzyme in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ribulose bisphosphate carboxylase small chain, chloroplastic-like
    Names
    Os12g0292400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11320272..11321374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764784.2 → XP_015620270.1  ribulose bisphosphate carboxylase small chain, chloroplastic-like

      UniProtKB/TrEMBL
      A2ZJQ0, A3CGK3, A6MZQ8, Q2QTJ1
      Conserved Domains (1) summary
      PLN02289
      Location:1 → 167
      PLN02289; ribulose-bisphosphate carboxylase small chain
    Nucleotide Protein
    Heading Accession and Version

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