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    LOC4325130 uncharacterized protein At4g28440 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325130, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4325130
    Gene description
    uncharacterized protein At4g28440
    Locus tag
    OSNPB_010754100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 20.2), leaves after flowering (RPKM 19.0) and 5 other tissues See more
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    Genomic context

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    See LOC4325130 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32238716..32240508, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31638604..31640497, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281091 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene callose synthase 12 Neighboring gene small nucleolar RNA J33 Neighboring gene altered inheritance of mitochondria protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein At4g28440
    Names
    DNA-binding protein
    DNA-binding protein-related-like
    Os01g0754100
    P0435B05.44
    P0503C12.16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32238716..32240508 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766485.3 → XP_015621971.1  uncharacterized protein At4g28440

      UniProtKB/TrEMBL
      B8A9R0, B9EZQ3, Q0JJ87, Q5JML8
      Conserved Domains (1) summary
      cd04491
      Location:56 → 114
      SoSSB_OBF; A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB ...
    Nucleotide Protein
    Heading Accession and Version

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