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    LOC4326083 beta-1,2-xylosyltransferase XYXT1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326083, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4326083
    Gene description
    beta-1,2-xylosyltransferase XYXT1-like
    Locus tag
    OSNPB_010119100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 25.2), flower buds (RPKM 18.4) and 2 other tissues See more
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    Genomic context

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    See LOC4326083 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1097011..1100667, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1089870..1093534, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene beta-1,2-xylosyltransferase XYXT1-like Neighboring gene beta-1,2-xylosyltransferase XYXT1-like Neighboring gene uncharacterized LOC107280783 Neighboring gene uncharacterized LOC4326084

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-1,2-xylosyltransferase XYXT1-like
    Names
    Os01g0119100
    P0494A10.30
    P0698A04.14
    putative HGA6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1097011..1100667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022405.2 → XP_025878190.1  beta-1,2-xylosyltransferase XYXT1-like isoform X1

      UniProtKB/TrEMBL
      Q5ZDT4, Q5ZEC2
      Conserved Domains (2) summary
      pfam04577
      Location:375 → 580
      DUF563; Protein of unknown function (DUF563)
      NF033913
      Location:142 → 266
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

    2. XM_066308486.1 → XP_066164583.1  beta-1,2-xylosyltransferase XYXT1-like isoform X1

    3. XM_015766606.3 → XP_015622092.1  beta-1,2-xylosyltransferase XYXT1-like isoform X2

      UniProtKB/TrEMBL
      B8ACY6, Q5ZDT4, Q5ZEC2
      Conserved Domains (2) summary
      PRK10905
      Location:138 → 268
      PRK10905; cell division protein DamX; Validated
      pfam04577
      Location:373 → 578
      DUF563; Protein of unknown function (DUF563)

    4. XM_015766605.3 → XP_015622091.1  beta-1,2-xylosyltransferase XYXT1-like isoform X1

      UniProtKB/TrEMBL
      Q5ZDT4, Q5ZEC2
      Conserved Domains (2) summary
      pfam04577
      Location:375 → 580
      DUF563; Protein of unknown function (DUF563)
      NF033913
      Location:142 → 266
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
    Nucleotide Protein
    Heading Accession and Version

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