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    LOC4324695 probable E3 ubiquitin-protein ligase RZFP34 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324695, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4324695
    Gene description
    probable E3 ubiquitin-protein ligase RZFP34
    Locus tag
    OSNPB_010719100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Tranpr
    Expression
    Ubiquitous expression in mature seeds (RPKM 113.2), roots after flowering (RPKM 86.4) and 6 other tissues See more
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    Genomic context

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    See LOC4324695 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30562267..30567728, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29965279..29970780, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene trihelix transcription factor ENAP1 Neighboring gene FCS-Like Zinc finger 10 Neighboring gene uncharacterized LOC9271943 Neighboring gene probable sulfate transporter 3.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase RZFP34
    Names
    Os01g0719100
    P0480C01.28-1
    putative RING finger and CHY zinc finger domain-containing protein 1
    zinc finger protein ZFP-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30562267..30567728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756330.3 → XP_015611816.1  probable E3 ubiquitin-protein ligase RZFP34

      UniProtKB/Swiss-Prot
      B9EZ62, Q5JL96, Q6PVY8
      UniProtKB/TrEMBL
      B8A8Q0
      Conserved Domains (3) summary
      pfam05495
      Location:61 → 143
      zf-CHY; CHY zinc finger
      pfam14599
      Location:244 → 300
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:196 → 240
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_066303411.1 → XP_066159508.1  probable E3 ubiquitin-protein ligase RZFP34

      UniProtKB/Swiss-Prot
      B9EZ62, Q5JL96, Q6PVY8

    3. XM_015756322.3 → XP_015611808.1  probable E3 ubiquitin-protein ligase RZFP34

      UniProtKB/Swiss-Prot
      B9EZ62, Q5JL96, Q6PVY8
      UniProtKB/TrEMBL
      B8A8Q0
      Conserved Domains (3) summary
      pfam05495
      Location:61 → 143
      zf-CHY; CHY zinc finger
      pfam14599
      Location:244 → 300
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:196 → 240
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_015756314.3 → XP_015611800.1  probable E3 ubiquitin-protein ligase RZFP34

      UniProtKB/Swiss-Prot
      B9EZ62, Q5JL96, Q6PVY8
      UniProtKB/TrEMBL
      B8A8Q0
      Conserved Domains (3) summary
      pfam05495
      Location:61 → 143
      zf-CHY; CHY zinc finger
      pfam14599
      Location:244 → 300
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:196 → 240
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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