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    LOC4345621 THO complex subunit 4D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345621, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345621
    Gene description
    THO complex subunit 4D
    Locus tag
    OSNPB_080427900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1663_D06.13
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 39.4), leaves before flowering (RPKM 38.5) and 6 other tissues See more
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    Genomic context

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    See LOC4345621 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20716142..20720639, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20578930..20583507, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable inactive receptor kinase RLK902 Neighboring gene probable histone H2A.3 Neighboring gene agamous-like MADS-box protein AGL80 Neighboring gene F-box protein SKIP28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 4D
    Names
    OSJNBb0032E15.120
    Os08g0427900
    putative transcriptional coactivator(DIP2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20716142..20720639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794415.3 → XP_015649901.1  THO complex subunit 4D isoform X2

      UniProtKB/TrEMBL
      B8BAZ9, B9G106
      Conserved Domains (2) summary
      COG0724
      Location:90 → 168
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12680
      Location:90 → 163
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

    2. XM_015794414.3 → XP_015649900.1  THO complex subunit 4D isoform X1

      UniProtKB/TrEMBL
      B8BAZ9, B9G106, Q0J5K6, Q7EY69
      Conserved Domains (2) summary
      TIGR01628
      Location:89 → 271
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12680
      Location:90 → 163
      RRM_THOC4; RNA recognition motif (RRM) found in THO complex subunit 4 (THOC4) and similar proteins

    3. XM_066303271.1 → XP_066159368.1  THO complex subunit 4D isoform X1

      UniProtKB/TrEMBL
      B8BAZ9, B9G106, Q0J5K6, Q7EY69
    Nucleotide Protein
    Heading Accession and Version

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