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    LOC4347962 peroxidase A2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347962, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4347962
    Gene description
    peroxidase A2
    Locus tag
    OSNPB_100109300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    prx125
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    Genomic context

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    See LOC4347962 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (661045..664378, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (655624..658902, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279035 Neighboring gene acyl transferase 15-like Neighboring gene peroxidase N Neighboring gene protein NRT1/ PTR FAMILY 8.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidase A2
    Names
    Os10g0109300
    class III peroxidase 125

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      661045..664378 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757350.3 → XP_015612836.1  peroxidase A2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XR31, A0A5S6RDU1, A2Z4F1, Q7XHB3, Q8S7Y4
      Conserved Domains (1) summary
      cd00693
      Location:32 → 335
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases

    2. XM_015757349.2 → XP_015612835.1  peroxidase A2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XR31
      Conserved Domains (2) summary
      cd00693
      Location:32 → 365
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
      PLN03030
      Location:37 → 366
      PLN03030; cationic peroxidase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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