LOC4328306 probable protein phosphatase 2C 10 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4328306
Gene description: probable protein phosphatase 2C 10
Locus tag: OSNPB_020149800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsPP2C10
Expression: Ubiquitous expression in roots after flowering (RPKM 49.6), leaves after flowering (RPKM 42.6) and 6 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 2

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (2752210..2755565)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (2744214..2747432)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cation binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein serine/threonine phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in peptidyl-threonine dephosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: probable protein phosphatase 2C 10

Names: LOC_Os02g05630; OSJNBa0050G13.3; putative protein phosphatase 2C

NP_001396253.1

EC 3.1.3.16

XP_025878969.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001409324.1 → NP_001396253.1 probable protein phosphatase 2C 10

Status: VALIDATED

Source sequence(s)

CA998987, CB648479, CI442758, CI708559, D39634

UniProtKB/Swiss-Prot

A0A0P0VER0, Q67UX7

UniProtKB/TrEMBL

B8AHS3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089036.1 Reference ASM3414082v1 Primary Assembly

Range

2752210..2755565

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026023184.2 → XP_025878969.1 probable protein phosphatase 2C 10 isoform X1

UniProtKB/TrEMBL

B8AHS3, B9F2R0

Conserved Domains (1) summary

cd00143
Location:101 → 348

PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...