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    LOC4331344 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331344, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4331344
    Gene description
    probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3
    Locus tag
    OSNPB_030109300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOGL3; OsJ_09119
    Expression
    Broad expression in roots after flowering (RPKM 42.3), leaves after flowering (RPKM 33.3) and 5 other tissues See more
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    Genomic context

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    See LOC4331344 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (545147..550306)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (537589..542670)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene uncharacterized LOC107280220 Neighboring gene homeobox-leucine zipper protein HOX10-like Neighboring gene small ribosomal subunit protein eS17x

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3
    Names
    LOC_Os03g01880
    OSJNBb0043C10.13
    Protein LONELY GUY-like 3
    NP_001410838.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423909.1 → NP_001410838.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3

      Status: VALIDATED

      Source sequence(s)
      AK099538, AP014959, AU056538, CF310796
      UniProtKB/Swiss-Prot
      A0A0P0VS49, Q10SW3, Q8H7U8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      545147..550306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H7U8.1 GenPept UniProtKB/Swiss-Prot:Q8H7U8

    Gene LinkOut

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