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    LOC4346358 protein PROTON GRADIENT REGULATION 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346358, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4346358
    Gene description
    protein PROTON GRADIENT REGULATION 5, chloroplastic
    Locus tag
    OSNPB_080566600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 15.9), roots after flowering (RPKM 14.8) and 5 other tissues See more
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    Genomic context

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    See LOC4346358 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28377775..28378889)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346356 Neighboring gene ribokinase Neighboring gene uncharacterized LOC4346359 Neighboring gene peroxisomal membrane protein PMP22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice. Nishikawa Y, et al. Plant Cell Physiol, 2012 Dec. PMID 23161858
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Decrease in the PGR5 level affects the accumulation of PGRL1 in rice. PGR5 is required for ferredoxin (Fd)-dependent plastoquinone (PQ) reduction in ruptured chloroplasts of rice.
      Title: PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthetic electron transport in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to high light intensity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PROTON GRADIENT REGULATION 5, chloroplastic
    Names
    OSJNBa0044E16.27
    Os08g0566600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28377775..28378889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792802.1 → XP_015648288.1  protein PROTON GRADIENT REGULATION 5, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XK08, A2YYA0, Q0J3K9, Q6Z1P2
    Nucleotide Protein
    Heading Accession and Version

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