U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4339426 probable starch synthase 4, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339426, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4339426
    Gene description
    probable starch synthase 4, chloroplastic/amyloplastic
    Locus tag
    OSNPB_050533600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SSIV-2
    Expression
    Ubiquitous expression in flower buds (RPKM 13.7), flowers (RPKM 12.3) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4339426 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26603828..26612133)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26485773..26494167)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA2 Neighboring gene probable serine acetyltransferase 5 Neighboring gene uncharacterized LOC4339427 Neighboring gene uncharacterized LOC4339428

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evolution and expression analysis of starch synthase III and IV in rice. Dian W, et al. J Exp Bot, 2005 Feb. PMID 15642712
    2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycogen (starch) synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable starch synthase 4, chloroplastic/amyloplastic
    Names
    Os05g0533600
    soluble starch synthase IV-2
    soluble starch synthase IVb
    starch synthase IVb
    starch synthase-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26603828..26612133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783519.3 → XP_015639005.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X1

      UniProtKB/TrEMBL
      B8B084, D0TZW8, Q0DGG7, Q84VC7, Q8L8G7
      Conserved Domains (1) summary
      PLN02939
      Location:12 → 905
      PLN02939; transferase, transferring glycosyl groups

    2. XM_026025461.2 → XP_025881246.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X2

      UniProtKB/TrEMBL
      D0TZW8, Q8L8G7
      Conserved Domains (1) summary
      PLN02939
      Location:12 → 863
      PLN02939; transferase, transferring glycosyl groups
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials