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    LOC4345330 uncharacterized LOC4345330 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345330, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345330
    Gene description
    uncharacterized LOC4345330
    Locus tag
    OSNPB_080343300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_B10.8
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    Genomic context

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    See LOC4345330 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15571008..15578646)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15494243..15501844)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 34 Neighboring gene uncharacterized LOC107277430 Neighboring gene berberine bridge enzyme-like D-2 Neighboring gene histone deacetylase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription open complex formation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345330
    Names
    Os08g0343300
    general transcription factor IIE subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      15571008..15578646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795375.2 → XP_015650861.1  uncharacterized protein LOC4345330

      UniProtKB/TrEMBL
      A0A0P0XEZ1, A2YU74, A3BS58, Q6ZB67
      Conserved Domains (1) summary
      cl30696
      Location:39 → 210
      TFIIE; Transcription initiation factor IIE
    Nucleotide Protein
    Heading Accession and Version

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