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    LOC4344290 alpha-galactosidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344290, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344290
    Gene description
    alpha-galactosidase 3
    Locus tag
    OSNPB_070679300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1205_F02.7; OJ1409_C08.26
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    Genomic context

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    See LOC4344290 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28998081..29002816)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28764400..28769216)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278351 Neighboring gene transcription repressor OFP1 Neighboring gene uncharacterized LOC4344291 Neighboring gene transcription factor RF2b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-galactosidase 3
    Names
    Os07g0679300
    putative alpha-galactosidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28998081..29002816
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791288.3 → XP_015646774.1  alpha-galactosidase 3

      UniProtKB/TrEMBL
      B8B656, Q69R81, Q7XIV4
      Conserved Domains (1) summary
      PLN02229
      Location:29 → 425
      PLN02229; alpha-galactosidase
    Nucleotide Protein
    Heading Accession and Version

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