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    LOC4339792 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339792, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339792
    Gene description
    ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic
    Locus tag
    OSNPB_050592100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 194.2), roots after flowering (RPKM 115.3) and 5 other tissues See more
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    Genomic context

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    See LOC4339792 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29682518..29686043, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29495934..29499478, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene receptor-like cytoplasmic kinase 176 Neighboring gene hypersensitive-induced response protein-like protein 1 Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2 Neighboring gene plant cysteine oxidase 2 Neighboring gene DNA damage-binding protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of endopeptidase Clp complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic
    Names
    Os05g0592100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29682518..29686043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785285.3 → XP_015640771.1  ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WRR2, B8AXJ0, Q0DFG6, Q6L4S1
      Conserved Domains (1) summary
      cd07017
      Location:162 → 342
      S14_ClpP_2; Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease
    Nucleotide Protein
    Heading Accession and Version

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