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    LOC4325006 NAC domain-containing protein 48-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325006, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325006
    Gene description
    NAC domain-containing protein 48-like
    Locus tag
    OSNPB_010884300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NAC6; NAC48; SNAC2; NAC048; OsNAC6; ONAC048; OsJ_04317
    Expression
    Broad expression in roots before flowering (RPKM 338.4), leaves before flowering (RPKM 177.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39029210..39031847, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38398973..38401528, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene gibberellin 20 oxidase 2-like Neighboring gene probable methyltransferase PMT24 Neighboring gene uncharacterized LOC136354785 Neighboring gene U-box domain-containing protein 4 Neighboring gene uncharacterized protein At5g08430

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 48
    Names
    B1065E10.51
    LOC_Os01g66120
    OsNAC6 protein
    Protein STRESS-RESPONSIVE NAC 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428170.1 → NP_001415099.1  NAC domain-containing protein 48

      Status: VALIDATED

      Source sequence(s)
      AK068392, AU056522, CI682016
      UniProtKB/Swiss-Prot
      A3A0A1, Q0JH48, Q7F2L3, Q9MBC4
      UniProtKB/TrEMBL
      A2WXN9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39029210..39031847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7F2L3.1 GenPept UniProtKB/Swiss-Prot:Q7F2L3

    Gene LinkOut

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