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    LOC4334154 large ribosomal subunit protein uL13w [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334154, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334154
    Gene description
    large ribosomal subunit protein uL13w
    Locus tag
    OSNPB_030756000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334154 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32173733..32175632)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31203301..31205307)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene small nucleolar RNA R12 Neighboring gene uncharacterized LOC4334153 Neighboring gene small nucleolar RNA R12 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene LRR receptor-like serine/threonine-protein kinase RPK2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL13w
    Names
    60S ribosomal protein L13a-4
    Os03g0756000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      32173733..32175632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776793.3 → XP_015632279.1  large ribosomal subunit protein uL13w

      UniProtKB/TrEMBL
      A0A0P0W383, A2XM46, A3AMU0, Q75J18
      Conserved Domains (1) summary
      PTZ00068
      Location:11 → 202
      PTZ00068; 60S ribosomal protein L13a; Provisional
    Nucleotide Protein
    Heading Accession and Version

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