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    LOC4342446 MD-2-related lipid-recognition protein ROSY1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342446, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342446
    Gene description
    MD-2-related lipid-recognition protein ROSY1
    Locus tag
    OSNPB_070159800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1714_H10.115
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    Genomic context

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    See LOC4342446 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3258706..3261604)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3198773..3201834)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL70 Neighboring gene probable receptor-like protein kinase At1g49730 Neighboring gene uncharacterized protein At3g28850 Neighboring gene ubiquitin carboxyl-terminal hydrolase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular sterol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MD-2-related lipid-recognition protein ROSY1
    Names
    Os07g0159800
    P0455F03.46
    phosphatidylglycerol/phosphatidylinositol transfer protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3258706..3261604
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792491.3 → XP_015647977.1  MD-2-related lipid-recognition protein ROSY1

      UniProtKB/TrEMBL
      A2YIC9, A3BGR7, Q8H559
      Conserved Domains (1) summary
      cd00917
      Location:27 → 141
      PG-PI_TP; The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
    Nucleotide Protein
    Heading Accession and Version

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