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    LOC4345019 xyloglucan endotransglycosylase/hydrolase protein 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345019, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345019
    Gene description
    xyloglucan endotransglycosylase/hydrolase protein 8-like
    Locus tag
    OSNPB_080237000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XRT5; XTH8; OsXRT5; OsXTH8
    Expression
    Biased expression in roots before flowering (RPKM 199.9), flowers (RPKM 52.1) and 2 other tissues See more
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    Genomic context

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    See LOC4345019 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (8380885..8382295)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8327871..8329298)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266931 Neighboring gene uncharacterized LOC136351460 Neighboring gene uncharacterized LOC9271749 Neighboring gene probable mannose-1-phosphate guanylyltransferase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice. Jan A, et al. Plant Physiol, 2004 Nov. PMID 15516498, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsXTH8 is differentially expressed in rice leaf sheath in relation to gibberellin and potentially involved in cell elongation processes. [OsXTH8]
      Title: Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xyloglucan endotransglycosylase/hydrolase protein 8
    Names
    End-xyloglucan transferase
    LOC_Os08g13920
    P0682A06.17
    putative end-xyloglucan transferase
    xyloglucan endotransglycosylase-related protein 5
    NP_001390454.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403525.1 → NP_001390454.1  xyloglucan endotransglycosylase/hydrolase protein 8 precursor

      Status: VALIDATED

      Source sequence(s)
      AU067866, CF304275, CI015523, CV722395
      UniProtKB/Swiss-Prot
      Q0J732, Q76BW5, Q7M1Y6
      UniProtKB/TrEMBL
      A2ZZJ6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      8380885..8382295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q76BW5.1 GenPept UniProtKB/Swiss-Prot:Q76BW5

    Gene LinkOut

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