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    LOC4334545 ADP-ribosylation factor 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334545, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334545
    Gene description
    ADP-ribosylation factor 1-like
    Locus tag
    OSNPB_030811900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 432.6), flower buds (RPKM 395.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334545 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34979713..34982646)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34006903..34009631)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3B subunit 6-like protein Neighboring gene uncharacterized LOC4334544 Neighboring gene probable DNA gyrase subunit A, chloroplastic/mitochondrial Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor 1-like
    Names
    Os03g0811900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418885.1 → NP_001405814.1  ADP-ribosylation factor 1-like

      Status: VALIDATED

      Source sequence(s)
      AU081520, CF320692, CI555503
      UniProtKB/TrEMBL
      A0A0P0W556, Q67G16, Q7XZG0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34979713..34982646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024224.2 → XP_025880009.1  ADP-ribosylation factor 1-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0W556, Q67G16, Q7XZG0
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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