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    LOC4324360 small ubiquitin-related modifier 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324360, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324360
    Gene description
    small ubiquitin-related modifier 1-like
    Locus tag
    OSNPB_010918300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SMT3; SUM1; SUMO1; SUMO-1; OsSUMO1; OsJ_04555
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    Genomic context

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    See LOC4324360 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40698974..40701053, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40064404..40066412, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein XRI1 Neighboring gene small ubiquitin-related modifier 1-like Neighboring gene uncharacterized LOC107280547 Neighboring gene protein CPR-5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein sumoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ubiquitin-related modifier 1
    Names
    LOC_Os01g68950
    P0413C03.34-1
    P0678F11.1-1
    Ubiquitin-like protein SMT3
    putative SUMO protein
    ubiquitin-related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406111.1 → NP_001393040.1  small ubiquitin-related modifier 1

      Status: VALIDATED

      Source sequence(s)
      CF291284, CI553157, CV726553
      UniProtKB/Swiss-Prot
      A0A0P0VC69, P55857, Q0JGK7, Q7F2W9
      UniProtKB/TrEMBL
      A2WYE1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40698974..40701053 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P55857.1 GenPept UniProtKB/Swiss-Prot:P55857

    Gene LinkOut

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