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    LOC4336676 DNA-binding protein MNB1B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336676, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336676
    Gene description
    DNA-binding protein MNB1B
    Locus tag
    OSNPB_040564600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 174.2), flower buds (RPKM 147.9) and 6 other tissues See more
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    Genomic context

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    See LOC4336676 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28799085..28802014)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28293180..28296132)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266233 Neighboring gene uncharacterized LOC4336675 Neighboring gene lethal(2) giant larvae protein homolog SRO77 Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene cis-zeatin O-glucosyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DNA-binding protein MNB1B; HMG1/2-like protein
    Names
    HMG protein
    HMG transcription factor
    Os04g0564600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28799085..28802014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781637.2 → XP_015637123.1  DNA-binding protein MNB1B isoform X1

      UniProtKB/TrEMBL
      A0A0P0WDX3, A2XWH1, B9FC03, Q01KG8, Q7XQK2
      Conserved Domains (1) summary
      cd01390
      Location:25 → 75
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    2. XM_015781638.2 → XP_015637124.1  HMG1/2-like protein isoform X2

      UniProtKB/TrEMBL
      C6F1P3
      Conserved Domains (1) summary
      cd01390
      Location:25 → 75
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    Nucleotide Protein
    Heading Accession and Version

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