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    LOC4333966 tubulin alpha-1 chain [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333966, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4333966
    Gene description
    tubulin alpha-1 chain
    Locus tag
    OSNPB_030726100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TubA
    Expression
    Broad expression in flowers (RPKM 1265.1), milk grains (RPKM 754.5) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30407191..30410053)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29526097..29528991)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH18 Neighboring gene uncharacterized LOC107276301 Neighboring gene inositol-tetrakisphosphate 1-kinase 3-like Neighboring gene CSC1-like protein RXW8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin alpha-1 chain
    Names
    Os03g0726100
    alpha tubulin
    alpha-tublin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30407191..30410053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774849.3 → XP_015630335.1  tubulin alpha-1 chain

      UniProtKB/TrEMBL
      A2XLK9, Q0DNZ2, Q43605, Q6AU01, Q75GI3, Q9FVI3
      Conserved Domains (1) summary
      PLN00221
      Location:1 → 439
      PLN00221; tubulin alpha chain; Provisional
    Nucleotide Protein
    Heading Accession and Version

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