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    LOC4325448 probable sucrose-phosphatase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325448, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325448
    Gene description
    probable sucrose-phosphatase 1
    Locus tag
    OSNPB_010376700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SPP1; OsSPP1; OsJ_01840; OsJ_001789
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    Genomic context

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    See LOC4325448 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15632059..15636638, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15568776..15573393, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269634 Neighboring gene uncharacterized LOC107278589 Neighboring gene glutathione S-transferase T3-like Neighboring gene desmethyl-deoxy-podophyllotoxin synthase Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sucrose-phosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sucrose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sucrose-phosphate phosphatase 1
    Names
    B1111C09.29
    LOC_Os01g27880
    sucrose-phosphatase-like protein
    NP_001388763.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401834.1 → NP_001388763.1  sucrose-phosphate phosphatase 1

      Status: VALIDATED

      Source sequence(s)
      AK071525, CI259986, CI586543
      UniProtKB/Swiss-Prot
      A0A0N7KCZ7, A2ZTB7, B7EJJ4, Q0JMN3, Q94E75

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      15632059..15636638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94E75.1 GenPept UniProtKB/Swiss-Prot:Q94E75

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