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    LOC4337083 zinc finger BED domain-containing protein RICESLEEPER 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337083, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337083
    Gene description
    zinc finger BED domain-containing protein RICESLEEPER 1-like
    Locus tag
    OSNPB_040628400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337083 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32484959..32488807, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31977254..31981153, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene peroxidase 1-like Neighboring gene NDR1/HIN1-like protein 13 Neighboring gene uncharacterized LOC4337084 Neighboring gene cyclin-P1-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger BED domain-containing protein RICESLEEPER 1-like
    Names
    Os04g0628400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32484959..32488807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024851.2 → XP_025880636.1  zinc finger BED domain-containing protein RICESLEEPER 1-like

      UniProtKB/TrEMBL
      A0A0P0WFF3, B8AUU1, Q00RK0, Q0J9W3, Q7XN74
      Conserved Domains (3) summary
      smart00614
      Location:47 → 92
      ZnF_BED; BED zinc finger
      pfam05699
      Location:728 → 810
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:586 → 685
      DUF4413; Domain of unknown function (DUF4413)

    2. XM_015780471.3 → XP_015635957.1  zinc finger BED domain-containing protein RICESLEEPER 1-like

      UniProtKB/TrEMBL
      A0A0P0WFF3, B8AUU1, Q00RK0, Q0J9W3, Q7XN74
      Conserved Domains (3) summary
      smart00614
      Location:47 → 92
      ZnF_BED; BED zinc finger
      pfam05699
      Location:728 → 810
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:586 → 685
      DUF4413; Domain of unknown function (DUF4413)

    3. XM_015780470.2 → XP_015635956.1  zinc finger BED domain-containing protein RICESLEEPER 1-like

      UniProtKB/TrEMBL
      A0A0P0WFF3, B8AUU1, Q00RK0, Q0J9W3, Q7XN74
      Conserved Domains (3) summary
      smart00614
      Location:47 → 92
      ZnF_BED; BED zinc finger
      pfam05699
      Location:728 → 810
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:586 → 685
      DUF4413; Domain of unknown function (DUF4413)

    4. XM_026024852.2 → XP_025880637.1  zinc finger BED domain-containing protein RICESLEEPER 1-like

      UniProtKB/TrEMBL
      A0A0P0WFF3, B8AUU1, Q00RK0, Q0J9W3, Q7XN74
      Conserved Domains (3) summary
      smart00614
      Location:47 → 92
      ZnF_BED; BED zinc finger
      pfam05699
      Location:728 → 810
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:586 → 685
      DUF4413; Domain of unknown function (DUF4413)
    Nucleotide Protein
    Heading Accession and Version

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