LOC4346885 probable trehalose-phosphate phosphatase 7 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4346885
Gene description: probable trehalose-phosphate phosphatase 7
Locus tag: OSNPB_090369400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: TPP7; OsTPP7; OJ1759_F09.33
Expression: Biased expression in roots before flowering (RPKM 730.1) and flowers (RPKM 42.4) See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	9	NC_029264.1 (12251861..12254085)

Chromosome 9 - NC_029264.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables trehalose-phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in trehalose biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: probable trehalose-phosphate phosphatase 7

Names: LOC_Os09g20390; P0564H06.39; Trehalose 6-phosphate phosphatase; putative trehalose-phosphatase B

XP_015651449.1

EC 3.1.3.12

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422742.1 → NP_001409671.1 probable trehalose-phosphate phosphatase 7

Status: VALIDATED

Source sequence(s)

AK288009, CB644544, CI249426, CI275035, CI694077

UniProtKB/Swiss-Prot

A0A0P0XM81, Q0J287, Q6H5L4

UniProtKB/TrEMBL

A0A0R8RQZ7, A0A8K1IB07, A2Z0I3

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029264.1 Reference IRGSP-1.0 Primary Assembly

Range

12251861..12254085

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015795963.1 → XP_015651449.1 probable trehalose-phosphate phosphatase 7

UniProtKB/Swiss-Prot

Q6H5L4

Conserved Domains (1) summary

cl21460
Location:34 → 369

HAD_like; Haloacid Dehalogenase-like Hydrolases