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    LOC4334321 vegetative cell wall protein gp1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334321, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334321
    Gene description
    vegetative cell wall protein gp1
    Locus tag
    OSNPB_030782200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334321 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (33394664..33396038)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32423246..32424538)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B8 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene uncharacterized LOC4334322 Neighboring gene vegetative cell wall protein gp1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    vegetative cell wall protein gp1
    Names
    Os03g0782200
    protein app1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      33394664..33396038
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774602.3 → XP_015630088.1  vegetative cell wall protein gp1

      UniProtKB/TrEMBL
      A0A8J8Y0Y4, B9F610, Q0DN12, Q10CI1
      Conserved Domains (1) summary
      PHA03247
      Location:39 → 178
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein
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