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    LOC4325700 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325700, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325700
    Gene description
    LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2
    Locus tag
    OSNPB_010136400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 17.7), roots after flowering (RPKM 11.8) and 5 other tissues See more
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    Genomic context

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    See LOC4325700 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1965663..1983180, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1957835..1967958, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 16.9 kDa class I heat shock protein 2-like Neighboring gene uncharacterized LOC4325699 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance. Li H, et al. Plant Mol Biol, 2009 Feb. PMID 19039666
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2
    Names
    Os01g0136400
    Os01g0136450
    Os01g0136500
    Os01g0136501
    Os01g0136700
    P0443D08.10
    P0443D08.11
    P0443D08.14
    probable serine/threonine-protein kinase At1g18390
    serine/threonine-specific protein kinase -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1965663..1983180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308969.1 → XP_066165066.1  LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X1

    2. XM_066308974.1 → XP_066165071.1  LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X3

    3. XM_015786685.3 → XP_015642171.1  LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UXP4, Q5ZC67
      Conserved Domains (3) summary
      smart00220
      Location:344 → 610
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      pfam14380
      Location:171 → 252
      WAK_assoc; Wall-associated receptor kinase C-terminal
      cl21453
      Location:346 → 613
      PKc_like; Protein Kinases, catalytic domain

    4. XM_015786695.3 → XP_015642181.1  LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X5

      Conserved Domains (3) summary
      smart00220
      Location:317 → 583
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      pfam13947
      Location:39 → 144
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:319 → 586
      PKc_like; Protein Kinases, catalytic domain

    5. XM_015786702.3 → XP_015642188.1  LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X6

      Conserved Domains (3) summary
      smart00220
      Location:309 → 575
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      pfam13947
      Location:31 → 149
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:311 → 578
      PKc_like; Protein Kinases, catalytic domain

    6. XM_015786690.3 → XP_015642176.1  LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X4

      Conserved Domains (4) summary
      smart00220
      Location:333 → 599
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      pfam13947
      Location:24 → 131
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:171 → 234
      WAK_assoc; Wall-associated receptor kinase C-terminal
      cl21453
      Location:335 → 602
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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