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    LOC4336243 CMP-sialic acid transporter 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336243, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336243
    Gene description
    CMP-sialic acid transporter 4-like
    Locus tag
    OSNPB_040490600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSTLP4
    Expression
    Ubiquitous expression in roots before flowering (RPKM 20.9), leaves after flowering (RPKM 14.4) and 6 other tissues See more
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    Genomic context

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    See LOC4336243 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25012274..25018438, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24515445..24521626, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272103 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC4336241 Neighboring gene PTI1-like tyrosine-protein kinase 3 Neighboring gene uncharacterized LOC4336244 Neighboring gene phosphoglycolate phosphatase 1A, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyrimidine nucleotide-sugar transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cMP-sialic acid transporter 4
    Names
    CMP-SA-Tr 4
    CMP-Sia-Tr 4
    CMP-sialic acid transporter 4
    CMP-sialic acid transporter-like protein 4
    OSJNBa0076N16.10
    OSJNBa0084K20.12
    Os04g0490600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419600.1 → NP_001406529.1  cMP-sialic acid transporter 4

      Status: VALIDATED

      Source sequence(s)
      AK063469, CI450553, CI693375
      UniProtKB/Swiss-Prot
      Q01IU9, Q7X7C4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25012274..25018438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X7C4.2 GenPept UniProtKB/Swiss-Prot:Q7X7C4

    Gene LinkOut

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