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    LOC9267495 signal recognition particle subunit SRP54, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267495, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9267495
    Gene description
    signal recognition particle subunit SRP54, chloroplastic
    Locus tag
    OSNPB_110153600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 42.2), roots after flowering (RPKM 22.9) and 5 other tissues See more
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    Genomic context

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    See LOC9267495 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2558155..2562856)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2512388..2517215)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 5 Neighboring gene protein FAF-like, chloroplastic Neighboring gene signal recognition particle subunit SRP54, chloroplastic Neighboring gene small ribosomal subunit protein eS25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of signal recognition particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    signal recognition particle subunit SRP54, chloroplastic
    Names
    Os11g0153600
    signal recognition particle 54 kDa protein, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2558155..2562856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760060.3 → XP_015615546.1  signal recognition particle subunit SRP54, chloroplastic

      UniProtKB/TrEMBL
      A0A6C0PIB7, B8BJ55, B9G9F9
      Conserved Domains (1) summary
      PRK10867
      Location:71 → 501
      PRK10867; signal recognition particle protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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