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    LOC4327687 mitochondrial carrier protein CoAc1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327687, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327687
    Gene description
    mitochondrial carrier protein CoAc1
    Locus tag
    OSNPB_010708900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0456F08.4
    Expression
    Broad expression in roots before flowering (RPKM 50.1), leaves before flowering (RPKM 49.8) and 5 other tissues See more
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    Genomic context

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    See LOC4327687 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29458567..29463035)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 5 Neighboring gene protein IQ-DOMAIN 1 Neighboring gene myb-related protein Zm38 Neighboring gene 5'-nucleotidase SurE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial carrier protein CoAc1
    Names
    Graves disease mitochondrial solute carrier protein-like
    Os01g0708900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29458567..29463035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756487.2 → XP_015611973.1  mitochondrial carrier protein CoAc1

      UniProtKB/TrEMBL
      A0A0P0V785, A0A5S6R9G4, A2WUB1, Q0JJY4, Q5NAJ0
      Conserved Domains (1) summary
      PTZ00169
      Location:27 → 323
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    Nucleotide Protein
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