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    LOC4341740 ubiquitin-conjugating enzyme E2 22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341740, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341740
    Gene description
    ubiquitin-conjugating enzyme E2 22
    Locus tag
    OSNPB_060660700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 32.8), roots before flowering (RPKM 30.0) and 6 other tissues See more
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    Genomic context

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    See LOC4341740 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28084501..28087926)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27219533..27223004)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 Neighboring gene glutathione S-transferase T3 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3 Neighboring gene uncharacterized LOC136356862 Neighboring gene uncharacterized LOC136356861

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 22
    Names
    OSJNBa0051O02.25
    Os06g0660700
    putative ubiquitin carrier protein E2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28084501..28087926
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789043.3 → XP_015644529.1  ubiquitin-conjugating enzyme E2 22 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WZL6, Q651V2
      Conserved Domains (1) summary
      cd00195
      Location:12 → 151
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_015789044.3 → XP_015644530.1  ubiquitin-conjugating enzyme E2 22 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WZL6, Q651V2
      Conserved Domains (1) summary
      cd00195
      Location:12 → 151
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    3. XM_026026051.2 → XP_025881836.1  ubiquitin-conjugating enzyme E2 22 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WZL6
      Conserved Domains (1) summary
      cd00195
      Location:61 → 200
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
    Heading Accession and Version

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