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    LOC4341033 protein MICRORCHIDIA 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341033, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341033
    Gene description
    protein MICRORCHIDIA 6
    Locus tag
    OSNPB_060474866
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.9), leaves before flowering (RPKM 14.5) and 6 other tissues See more
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    Genomic context

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    See LOC4341033 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (16766702..16780626, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (15918844..15933061, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277140 Neighboring gene chaperone protein dnaJ C76, chloroplastic Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MICRORCHIDIA 6
    Names
    Os06g0474866
    Os06g0474900
    P0021H10.10-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      16766702..16780626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788111.3 → XP_015643597.1  protein MICRORCHIDIA 6 isoform X1

      UniProtKB/TrEMBL
      B8B225
      Conserved Domains (1) summary
      cl00075
      Location:273 → 408
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

    2. XM_015788112.3 → XP_015643598.1  protein MICRORCHIDIA 6 isoform X2

      UniProtKB/TrEMBL
      B8B225
      Conserved Domains (2) summary
      pfam17942
      Location:503 → 640
      Morc6_S5; Morc6 ribosomal protein S5 domain 2-like
      cl00075
      Location:261 → 382
      HATPase; Histidine kinase-like ATPase domain

    3. XM_015788113.3 → XP_015643599.1  protein MICRORCHIDIA 6 isoform X3

      UniProtKB/TrEMBL
      B8B225
      Conserved Domains (1) summary
      cl00075
      Location:273 → 408
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

    4. XM_015788114.3 → XP_015643600.1  protein MICRORCHIDIA 6 isoform X4

      UniProtKB/TrEMBL
      B7F5F8
      Conserved Domains (1) summary
      cl00075
      Location:18 → 150
      HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

    RNA

    1. XR_001546884.3 RNA Sequence

    2. XR_001546883.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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