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    LOC4350404 pentatricopeptide repeat-containing protein At3g49240, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350404, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4350404
    Gene description
    pentatricopeptide repeat-containing protein At3g49240, mitochondrial
    Locus tag
    OSNPB_110433600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350404 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (15881831..15884107)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (14027550..14029874)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 2-like Neighboring gene protein transport protein SEC23 E Neighboring gene protein ALP1-like Neighboring gene large ribosomal subunit protein eL38z/eL38y

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g49240, mitochondrial
    Names
    Os11g0433600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      15881831..15884107
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759670.3 → XP_015615156.1  pentatricopeptide repeat-containing protein At3g49240, mitochondrial

      UniProtKB/TrEMBL
      Q2R5L6, Q53NS3
      Conserved Domains (3) summary
      PLN03081
      Location:173 → 522
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:322 → 354
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:135 → 184
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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