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    LOC4325474 putative lipid phosphate phosphatase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325474, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325474
    Gene description
    putative lipid phosphate phosphatase 3, chloroplastic
    Locus tag
    OSNPB_010139600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0480E02.7
    Expression
    Restricted expression toward mature seeds (RPKM 39.7) See more
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    Genomic context

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    See LOC4325474 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2104988..2108347)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2097197..2101706)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B9 Neighboring gene leucine-rich repeat extensin-like protein 2 Neighboring gene uncharacterized LOC136354996 Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipid phosphate phosphatase 3, chloroplastic
    Names
    Os01g0139600
    phosphatidic acid phosphata -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2104988..2108347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777344.3 → XP_015632830.1  putative lipid phosphate phosphatase 3, chloroplastic isoform X2

      UniProtKB/TrEMBL
      Q5ZDH1
      Conserved Domains (1) summary
      cd03390
      Location:3 → 192
      PAP2_containing_1_like; PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both ...

    2. XM_015777335.3 → XP_015632821.1  putative lipid phosphate phosphatase 3, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0UY14, B8AD58, Q0JQT7
      Conserved Domains (2) summary
      PLN02250
      Location:11 → 305
      PLN02250; lipid phosphate phosphatase
      cd03390
      Location:63 → 252
      PAP2_containing_1_like; PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both ...
    Nucleotide Protein
    Heading Accession and Version

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