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    LOC4345073 zinc finger protein CONSTANS-LIKE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345073, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345073
    Gene description
    zinc finger protein CONSTANS-LIKE 3
    Locus tag
    OSNPB_080249000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345073 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (9154541..9155936)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (9098468..9099883)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene aspartate carbamoyltransferase, chloroplastic-like Neighboring gene ADP-ribosylation factor 3 Neighboring gene probable receptor-like serine/threonine-protein kinase At5g57670 Neighboring gene uncharacterized LOC4345075

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 3
    Names
    CONSTANS-like protein
    OSJNBa0012K14.8
    OSJNBb0003H03.30
    Os08g0249000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      9154541..9155936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793232.3 → XP_015648718.1  zinc finger protein CONSTANS-LIKE 3

      Conserved Domains (2) summary
      cd00021
      Location:26 → 59
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      pfam06203
      Location:204 → 234
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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