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    LOC9268615 protease Do-like 8, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268615, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9268615
    Gene description
    protease Do-like 8, chloroplastic
    Locus tag
    OSNPB_040459900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 21.8), roots after flowering (RPKM 12.1) and 4 other tissues See more
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    Genomic context

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    See LOC9268615 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23449080..23454696)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22954842..22960516)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene NAP1-related protein 1-like Neighboring gene ATP-dependent RNA helicase SUV3L, mitochondrial-like Neighboring gene amino acid transporter AVT1I-like Neighboring gene amino acid transporter AVT1I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protease Do-like 8, chloroplastic
    Names
    Os04g0459900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23449080..23454696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778519.3 → XP_015634005.1  protease Do-like 8, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B7EBF9, B8AUQ8, B9FFJ1, C7J167, Q01IJ2, Q7XUW0
      Conserved Domains (1) summary
      TIGR02037
      Location:149 → 444
      degP_htrA_DO; periplasmic serine protease, Do/DeqQ family

    2. XM_015778520.3 → XP_015634006.1  protease Do-like 8, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8AUQ8, B9FFJ1, Q01IJ2, Q7XUW0
      Conserved Domains (1) summary
      TIGR02037
      Location:94 → 389
      degP_htrA_DO; periplasmic serine protease, Do/DeqQ family
    Nucleotide Protein
    Heading Accession and Version

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