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    LOC4352701 calcineurin B-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352701, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4352701
    Gene description
    calcineurin B-like protein 2
    Locus tag
    OSNPB_120597000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CBL2; OsJ_36745
    Expression
    Ubiquitous expression in roots before flowering (RPKM 34.1), flowers (RPKM 17.1) and 6 other tissues See more
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    Genomic context

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    See LOC4352701 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25063161..25068211)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene protein DA1-related 1 Neighboring gene phosphatidylinositol-glycan biosynthesis class X protein Neighboring gene TNF receptor-associated factor homolog 1a Neighboring gene uncharacterized LOC4352704

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses. Gu Z, et al. Gene, 2008 May 31. PMID 18395997
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcineurin B-like protein 2
    Names
    LOC_Os12g40510

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423608.1 → NP_001410537.1  calcineurin B-like protein 2

      Status: VALIDATED

      Source sequence(s)
      CB670155, CB676607, CI375930, CI582413, DQ201196
      UniProtKB/Swiss-Prot
      B9GE30, Q2QMP2, Q3HRP5
      UniProtKB/TrEMBL
      B8BMT9

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25063161..25068211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765306.2 → XP_015620792.1  calcineurin B-like protein 2

      UniProtKB/Swiss-Prot
      Q3HRP5
      Conserved Domains (1) summary
      COG5126
      Location:33 → 197
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RNA

    1. XR_001542360.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3HRP5.1 GenPept UniProtKB/Swiss-Prot:Q3HRP5

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials