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    LOC4324622 probable sugar phosphate/phosphate translocator At1g06470 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324622, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324622
    Gene description
    probable sugar phosphate/phosphate translocator At1g06470
    Locus tag
    OSNPB_010749900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 10.7), leaves after flowering (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    See LOC4324622 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31994966..32000136)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31394837..31400113)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 Neighboring gene transcription repressor OFP3 Neighboring gene ras-related protein RIC2-like Neighboring gene probable WRKY transcription factor 65

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in UDP-glucose transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cis-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable sugar phosphate/phosphate translocator At1g06470
    Names
    Os01g0749900
    P0481E12.47
    phosphate translocator-related-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31994966..32000136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792082.3 → XP_015647568.1  probable sugar phosphate/phosphate translocator At1g06470

      UniProtKB/TrEMBL
      A0A0P0V886, B8A9F6, Q0JJB5
      Conserved Domains (1) summary
      cd21092
      Location:195 → 440
      TPT_S35C2; solute carrier family 35 member C2, member of the triose-phosphate transporter family

    RNA

    1. XR_001547777.3 RNA Sequence

    2. XR_010734859.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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