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    LOC4341038 uncharacterized LOC4341038 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341038, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341038
    Gene description
    uncharacterized LOC4341038
    Locus tag
    OSNPB_060476200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 223.0), roots after flowering (RPKM 101.4) and 2 other tissues See more
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    Genomic context

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    See LOC4341038 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (16858935..16880422)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (16011187..16032848)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341035 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC136356857 Neighboring gene uncharacterized LOC9269119

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphomannomutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341038
    Names
    OSJNBa0026P23.2-1
    OSJNBa0026P23.2-2
    Os06g0476200
    Os06g0476300
    P0021H10.29-2
    phosphomannomutase/phosphoglucomutase
    putative phosphomannomutase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      16858935..16880422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788146.3 → XP_015643632.1  uncharacterized protein LOC4341038

      UniProtKB/TrEMBL
      A0A0P0WWN5, B8B229, B9FTA1, Q69TT2
      Conserved Domains (2) summary
      cd03089
      Location:80 → 603
      PMM_PGM; The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a ...
      PLN02371
      Location:2 → 617
      PLN02371; phosphoglucosamine mutase family protein

    RNA

    1. XR_003242960.2 RNA Sequence

    2. XR_001546897.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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