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    LOC4342450 CST complex subunit TEN1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342450, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342450
    Gene description
    CST complex subunit TEN1
    Locus tag
    OSNPB_070160300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1714_H10.123
    Expression
    Ubiquitous expression in milk grains (RPKM 4.4), roots before flowering (RPKM 3.8) and 6 other tissues See more
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    Genomic context

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    See LOC4342450 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3301366..3305092)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3241366..3244647)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein YABBY 1-like Neighboring gene uncharacterized LOC136357286 Neighboring gene uncharacterized LOC136351056 Neighboring gene uncharacterized LOC4342451 Neighboring gene F-box/FBD/LRR-repeat protein At1g78750 Neighboring gene fasciclin-like arabinogalactan protein 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomerase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CST complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CST complex subunit TEN1
    Names
    Os07g0160300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3301366..3305092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791898.3 → XP_015647384.1  CST complex subunit TEN1

      UniProtKB/TrEMBL
      A2YID5, A3BGS5
      Conserved Domains (1) summary
      pfam15490
      Location:8 → 119
      Ten1_2; Telomere-capping, CST complex subunit

    2. XM_015791896.3 → XP_015647382.1  CST complex subunit TEN1

      UniProtKB/TrEMBL
      A2YID5, A3BGS5
      Conserved Domains (1) summary
      pfam15490
      Location:8 → 119
      Ten1_2; Telomere-capping, CST complex subunit
    Nucleotide Protein
    Heading Accession and Version

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