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    LOC4330065 uncharacterized LOC4330065 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330065, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330065
    Gene description
    uncharacterized LOC4330065
    Locus tag
    OSNPB_020633100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1643_A10.15-1
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    Genomic context

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    See LOC4330065 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25866106..25879126, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25379745..25392806, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1 EG1, chloroplastic/mitochondrial-like Neighboring gene uncharacterized LOC136355058 Neighboring gene wall-associated receptor kinase 5 Neighboring gene small ribosomal subunit protein mL103 (rPPR7) Neighboring gene probable metal-nicotianamine transporter YSL14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 5S class rRNA transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIIC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330065
    Names
    Os02g0633100
    transcription factor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25866106..25879126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307173.1 → XP_066163270.1  uncharacterized protein LOC4330065 isoform X2

      UniProtKB/TrEMBL
      Q0DZB7, Q6H7J8

    2. XM_015770032.3 → XP_015625518.1  uncharacterized protein LOC4330065 isoform X1

      UniProtKB/TrEMBL
      B8AFS4
      Conserved Domains (2) summary
      cd16169
      Location:517 → 608
      Tau138_eWH; extended winged-helix domain of tau138 and related proteins
      pfam04182
      Location:111 → 197
      B-block_TFIIIC; B-block binding subunit of TFIIIC
    Nucleotide Protein
    Heading Accession and Version

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