U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9266439 uncharacterized LOC9266439 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266439, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9266439
    Gene description
    uncharacterized LOC9266439
    Locus tag
    OSNPB_120539700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os12g0539751
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9266439 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (22246871..22257956)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (21560058..21570425)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277771 Neighboring gene uncharacterized LOC136354830 Neighboring gene uncharacterized LOC4352430 Neighboring gene uncharacterized LOC4352431

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC9266439
    Names
    Os12g0539700

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      22246871..22257956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021889.2 → XP_025877674.1  uncharacterized protein LOC9266439 isoform X1

      Conserved Domains (2) summary
      cd04480
      Location:657 → 723
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      pfam14214
      Location:433 → 597
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    2. XM_015764555.3 → XP_015620041.1  uncharacterized protein LOC9266439 isoform X3

      Conserved Domains (1) summary
      pfam14214
      Location:433 → 596
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    3. XM_026021894.2 → XP_025877679.1  uncharacterized protein LOC9266439 isoform X2

      Conserved Domains (2) summary
      cd04480
      Location:628 → 694
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      pfam14214
      Location:404 → 568
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    4. XM_026021899.2 → XP_025877684.1  uncharacterized protein LOC9266439 isoform X6

      Conserved Domains (2) summary
      cd04480
      Location:541 → 607
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      pfam14214
      Location:317 → 481
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    5. XM_026021896.2 → XP_025877681.1  uncharacterized protein LOC9266439 isoform X4

      Conserved Domains (2) summary
      cd04480
      Location:556 → 622
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      pfam14214
      Location:332 → 496
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    6. XM_066306337.1 → XP_066162434.1  uncharacterized protein LOC9266439 isoform X8

    7. XM_026021897.2 → XP_025877682.1  uncharacterized protein LOC9266439 isoform X4

      Conserved Domains (2) summary
      cd04480
      Location:556 → 622
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      pfam14214
      Location:332 → 496
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    8. XM_015764564.3 → XP_015620050.1  uncharacterized protein LOC9266439 isoform X7

      UniProtKB/TrEMBL
      A0A0P0YAU8
      Conserved Domains (1) summary
      pfam14214
      Location:433 → 596
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    9. XM_066306338.1 → XP_066162435.1  uncharacterized protein LOC9266439 isoform X9

    10. XM_015764560.3 → XP_015620046.1  uncharacterized protein LOC9266439 isoform X5

      UniProtKB/TrEMBL
      A0A0P0YAU8
      Conserved Domains (1) summary
      pfam14214
      Location:433 → 596
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    11. XM_026021890.2 → XP_025877675.1  uncharacterized protein LOC9266439 isoform X1

      Conserved Domains (2) summary
      cd04480
      Location:657 → 723
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      pfam14214
      Location:433 → 597
      Helitron_like_N; Helitron helicase-like domain at N-terminus

    12. XM_066306336.1 → XP_066162433.1  uncharacterized protein LOC9266439 isoform X4

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials