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    LOC4336733 guard cell S-type anion channel SLAC1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336733, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336733
    Gene description
    guard cell S-type anion channel SLAC1
    Locus tag
    OSNPB_040574700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 4.6), leaves after flowering (RPKM 4.5) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (29435908..29438180)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28929773..28932032)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene growth-regulating factor 12-like Neighboring gene ankyrin repeat and zinc finger domain-containing protein 1 Neighboring gene 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic Neighboring gene H/ACA ribonucleoprotein complex subunit 4 Neighboring gene uncharacterized LOC4336738

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Contribution of the S-type Anion Channel SLAC1 to Stomatal Control and Its Dependence on Developmental Stage in Rice. Kusumi K, et al. Plant Cell Physiol, 2017 Dec 1. PMID 29040767
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SLAC1 plays a crucial role in regulating stomata in rice at the tillering stage.
      Title: Contribution of the S-type Anion Channel SLAC1 to Stomatal Control and Its Dependence on Developmental Stage in Rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated monoatomic anion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular monoatomic ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in stomatal closure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    guard cell S-type anion channel SLAC1
    Names
    Os04g0574700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      29435908..29438180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781405.3 → XP_015636891.1  guard cell S-type anion channel SLAC1

      UniProtKB/TrEMBL
      A2XWN1, Q0JAV3, Q7XTX7
      Conserved Domains (1) summary
      cd09323
      Location:200 → 494
      TDT_SLAC1_like; Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes SLAC1 (Slow Anion Channel-Associated 1)
    Nucleotide Protein
    Heading Accession and Version

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