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    LOC4331392 bifunctional fucokinase/fucose pyrophosphorylase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331392, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331392
    Gene description
    bifunctional fucokinase/fucose pyrophosphorylase
    Locus tag
    OSNPB_030115100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331392 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (859932..864820, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (852327..857306, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-2 Neighboring gene early nodulin-like protein 8 Neighboring gene uncharacterized LOC4331393 Neighboring gene pentatricopeptide repeat-containing protein At3g53170

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fucokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GDP-L-fucose salvage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional fucokinase/fucose pyrophosphorylase
    Names
    Os03g0115100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      859932..864820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776362.3 → XP_015631848.1  bifunctional fucokinase/fucose pyrophosphorylase isoform X2

      UniProtKB/TrEMBL
      B8ALU8
      Conserved Domains (2) summary
      PRK13412
      Location:66 → 922
      fkp; bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
      pfam07959
      Location:26 → 416
      Fucokinase; L-fucokinase

    2. XM_015776363.3 → XP_015631849.1  bifunctional fucokinase/fucose pyrophosphorylase isoform X3

      UniProtKB/TrEMBL
      B8ALU8
      Conserved Domains (4) summary
      COG2605
      Location:519 → 842
      COG2605; Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
      pfam00288
      Location:626 → 692
      GHMP_kinases_N; GHMP kinases N terminal domain
      pfam07959
      Location:1 → 343
      Fucokinase; L-fucokinase
      pfam08544
      Location:769 → 845
      GHMP_kinases_C; GHMP kinases C terminal

    3. XM_015776361.3 → XP_015631847.1  bifunctional fucokinase/fucose pyrophosphorylase isoform X1

      UniProtKB/TrEMBL
      A0A0P0VS75, B8ALU8, Q8GZW3
      Conserved Domains (2) summary
      PRK13412
      Location:31 → 1057
      fkp; bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
      pfam07959
      Location:150 → 551
      Fucokinase; L-fucokinase
    Nucleotide Protein
    Heading Accession and Version

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