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    LOC4333696 uncharacterized LOC4333696 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333696, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333696
    Gene description
    uncharacterized LOC4333696
    Locus tag
    OSNPB_030672700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 27.1), roots after flowering (RPKM 25.7) and 6 other tissues See more
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    Genomic context

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    See LOC4333696 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (27419608..27428468, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26547201..26556150, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333695 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 2 Neighboring gene chalcone synthase-like Neighboring gene endo-1,4-beta-xylanase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333696
    Names
    Os03g0672700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      27419608..27428468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775738.3 → XP_015631224.1  uncharacterized protein LOC4333696

      UniProtKB/TrEMBL
      B8AP41, Q84R59
      Conserved Domains (2) summary
      pfam11705
      Location:144 → 225
      RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31
      cl21498
      Location:538 → 609
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_015775740.3 → XP_015631226.1  uncharacterized protein LOC4333696

      UniProtKB/TrEMBL
      B8AP41, Q84R59
      Conserved Domains (2) summary
      pfam11705
      Location:144 → 225
      RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31
      cl21498
      Location:538 → 609
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. XM_026023768.2 → XP_025879553.1  uncharacterized protein LOC4333696

      UniProtKB/TrEMBL
      B8AP41, Q84R59
      Conserved Domains (2) summary
      pfam11705
      Location:144 → 225
      RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31
      cl21498
      Location:538 → 609
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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