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    LOC4328085 protein LPA3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328085, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328085
    Gene description
    protein LPA3
    Locus tag
    OSNPB_020117100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1442_E05.24
    Expression
    Broad expression in leaves before flowering (RPKM 39.3), roots after flowering (RPKM 22.6) and 6 other tissues See more
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    Genomic context

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    See LOC4328085 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (902751..907102)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (896039..900372)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit 4 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene uncharacterized LOC4328086 Neighboring gene signal peptide peptidase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LPA3
    Names
    Os02g0117100
    protein LOW PSII ACCUMULATION 3, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      902751..907102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771655.3 → XP_015627141.1  protein LPA3

      UniProtKB/TrEMBL
      A3A2G3, B8AGH9, Q6ZGM0
      Conserved Domains (1) summary
      pfam09353
      Location:75 → 329
      DUF1995; Domain of unknown function (DUF1995)
    Nucleotide Protein
    Heading Accession and Version

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