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    LOC4349510 choline-phosphate cytidylyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349510, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349510
    Gene description
    choline-phosphate cytidylyltransferase 2
    Locus tag
    OSNPB_100578900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CPCT
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    Genomic context

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    See LOC4349510 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23771604..23774247, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23079468..23082292, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At1g16830 Neighboring gene probable methyltransferase At1g29790 Neighboring gene plastidal glycolate/glycerate translocator 1, chloroplastic Neighboring gene 4-coumarate--CoA ligase-like 2 Neighboring gene CSC1-like protein At1g32090

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables choline-phosphate cytidylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylcholine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CDP-choline pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    choline-phosphate cytidylyltransferase 2
    Names
    Os10g0578900
    cholinephosphate cytidylyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23771604..23774247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758754.2 → XP_015614240.1  choline-phosphate cytidylyltransferase 2

      UniProtKB/TrEMBL
      A0A5S6RCR2, A2ZAL2, A3C7N3, Q7XBT6, Q9FRQ1, Q9XFE5
      Conserved Domains (1) summary
      PLN02413
      Location:7 → 289
      PLN02413; choline-phosphate cytidylyltransferase
    Nucleotide Protein
    Heading Accession and Version

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